Michael Clark

• Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.

  Betts JA. et al, (2017), Am J Hum Genet, 101, 255 - 266

• RNAcentral: a comprehensive database of non-coding RNA sequences.

  The RNAcentral Consortium None., (2017), Nucleic Acids Res, 45, D128 - D134

• Improved definition of the mouse transcriptome via targeted RNA sequencing.

  Bussotti G. et al, (2016), Genome Res, 26, 705 - 716

• Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

  Clark MB. et al, (2015), Nat Methods, 12, 339 - 342

• Genome-wide discovery of human splicing branchpoints.

  Mercer TR. et al, (2015), Genome Res, 25, 290 - 303

• RNAcentral: an international database of ncRNA sequences.

  RNAcentral Consortium None., (2015), Nucleic Acids Res, 43, D123 - D129

• lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs.

  Quek XC. et al, (2015), Nucleic Acids Res, 43, D168 - D173

• Quantitative gene expression profiling with targeted RNA sequencing

  Clark MB. et al, (2014), FEBS JOURNAL, 281, 45 - 45

• Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.

  Mercer TR. et al, (2014), Nat Protoc, 9, 989 - 1009

• DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.

  Mercer TR. et al, (2013), Nat Genet, 45, 852 - 859

• The dark matter rises: the expanding world of regulatory RNAs.

  Clark MB. et al, (2013), Essays Biochem, 54, 1 - 16

• Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

  Gascoigne DK. et al, (2012), Bioinformatics, 28, 3042 - 3050

• Genome-wide analysis of long noncoding RNA stability.

  Clark MB. et al, (2012), Genome Res, 22, 885 - 898

• RNA lights up

  Mattick JS. and Clark MB., (2011), Nature Biotechnology, 29, 883 - 884

• The reality of pervasive transcription.

  Clark MB. et al, (2011), PLoS Biol, 9

• Long noncoding RNAs in cell biology

  Clark MB. and Mattick JS., (2011), Seminars in Cell & Developmental Biology, 22, 366 - 376

• SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer

  Askarian-Amiri ME. et al, (2011), RNA, 17, 878 - 891

• lncRNAdb: a reference database for long noncoding RNAs

  Amaral PP. et al, (2011), Nucleic Acids Research, 39, D146 - D151

• Mammalian Gene PEG10 Expresses Two Reading Frames by High Efficiency –1 Frameshifting in Embryonic-associated Tissues

  Clark MB. et al, (2007), Journal of Biological Chemistry, 282, 37359 - 37369

Recent Publications

• Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.

  Betts JA. et al, (2017), Am J Hum Genet, 101, 255 - 266
• RNAcentral: a comprehensive database of non-coding RNA sequences.

  The RNAcentral Consortium None., (2017), Nucleic Acids Res, 45, D128 - D134
• Improved definition of the mouse transcriptome via targeted RNA sequencing.

  Bussotti G. et al, (2016), Genome Res, 26, 705 - 716
• Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

  Clark MB. et al, (2015), Nat Methods, 12, 339 - 342
• Genome-wide discovery of human splicing branchpoints.

  Mercer TR. et al, (2015), Genome Res, 25, 290 - 303